Research Groups

Gene regulation and morphogenesis

Dr Ozren Bogdanovic
Developmental epigenomics
Dr Ozren Bogdanovic
Principal Investigator

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Relevant publications



1. Skvortsova K, Bertrand S, Voronov D, Duckett PE, Ross SE, Magri MS, Maeso I, Weatheritt RJ, Gómez Skarmeta JL, Arnone MI, Escriva H, Bogdanovic. Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins O. bioRxiv. 2021.11.07.467601.


2. Angeloni A, Ferguson J, Bogdanovic O. Nanopore Sequencing and Data Analysis for Base-Resolution Genome-Wide 5-Methylcytosine Profiling. Methods Mol Biol.2022;2458:75-94.

3. Skvortsova K, Bogdanovic O. TAB-seq and ACE-seq Data Processing for Genome-Wide DNA hydroxymethylation Profiling. Methods Mol Biol. 2021;2272:163-178.

4. Ross SE, Hesselson D, Bogdanovic O. Developmental Accumulation of Gene Body and Transposon Non-CpG Methylation in the Zebrafish Brain. Front Cell Dev Biol. 2021 Mar 4;9:643603.

5. Ross SE, Angeloni A, Geng FS, de Mendoza A, Bogdanovic O. Developmental remodelling of non-CG methylation at satellite DNA repeats. Nucleic Acids Res. 2020 Dec 16;48(22):12675-12688.

6. de Mendoza A, Lister R, Bogdanovic O. Evolution of DNA Methylome Diversity in Eukaryotes. J Mol Biol. 2019 Nov 11:S0022-2836(19)30659-X.

7. Skvortsova K, Tarbashevich K, Stehling M, Lister R, Irimia M, Raz E, Bogdanovic O. Retention of paternal DNA methylome in the developing zebrafish germline. Nat Commun. 2019 Jul 11;10(1):3054.

8. Marlétaz F*, Firbas PN*, Maeso I*, Tena JJ*, Bogdanovic O*, Perry M*, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. 2018 Dec;564(7734):64-70.

9. Skvortsova K, Iovino N, Bogdanovic O. Functions and mechanisms of epigenetic inheritance in animals. Nat Rev Mol Cell Biol. 2018 Dec;19(12):774-790.

10. Bogdanovic O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, Sauka-Spengler T, Ecker JR, Vermeulen M, Gómez-Skarmeta JL, Lister R. Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nat Genet. 2016 Apr;48(4):417-26.

For more detailed information about our work please check out the lab website